X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=hclustercommand.h;h=1b8e9b7607df66c0a36621f31ced21772f36a909;hp=6bf559ae6937f130679a5b601e939d7b79193acc;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96 diff --git a/hclustercommand.h b/hclustercommand.h index 6bf559a..1b8e9b7 100644 --- a/hclustercommand.h +++ b/hclustercommand.h @@ -18,7 +18,7 @@ #include "readcluster.h" /******************************************************************/ -//This command is an implementation of the HCluster algorythmn described in +//This command is an implementation of the HCluster algorithmn described in //ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences by //Yijun Sun1,2,*, Yunpeng Cai2, Li Liu1, Fahong Yu1, Michael L. Farrell3, William McKendree3 //and William Farmerie1 1 @@ -38,8 +38,9 @@ public: vector setParameters(); string getCommandName() { return "hcluster"; } string getCommandCategory() { return "Clustering"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "Sun Y, Cai Y, Liu L, Yu F, Farrell ML, Mckendree W, Farmerie W (2009). ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37: e76. \nhttp://www.mothur.org/wiki/Hcluster"; } string getDescription() { return "cluster your sequences into OTUs using a distance matrix"; }