X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=hclustercommand.h;h=1b8e9b7607df66c0a36621f31ced21772f36a909;hp=5fbdb3d1ab3bfe15a141c1d710ea6d84186a07db;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6

diff --git a/hclustercommand.h b/hclustercommand.h
index 5fbdb3d..1b8e9b7 100644
--- a/hclustercommand.h
+++ b/hclustercommand.h
@@ -18,7 +18,7 @@
 #include "readcluster.h"
 
 /******************************************************************/
-//This command is an implementation of the HCluster algorythmn described in 
+//This command is an implementation of the HCluster algorithmn described in 
 //ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences by
 //Yijun Sun1,2,*, Yunpeng Cai2, Li Liu1, Fahong Yu1, Michael L. Farrell3, William McKendree3 
 //and William Farmerie1 1 
@@ -36,10 +36,14 @@ public:
 	~HClusterCommand(){}
 	
 	vector<string> setParameters();
-	string getCommandName()			{ return "hcluster";				}
-	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getHelpString();	
+	string getCommandName()			{ return "hcluster";	}
+	string getCommandCategory()		{ return "Clustering";	}
 	
+	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "Sun Y, Cai Y, Liu L, Yu F, Farrell ML, Mckendree W, Farmerie W (2009). ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37: e76. \nhttp://www.mothur.org/wiki/Hcluster"; }
+	string getDescription()		{ return "cluster your sequences into OTUs using a distance matrix"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }