X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=groupmap.h;fp=groupmap.h;h=bdcd61e7c763cc10e31088d3292064887a8070a8;hp=d6984952188de368c765bf2997198f1fefb8bce5;hb=9bbd9b071066b7b11c1ab95aa01942abc933e0fb;hpb=af0a94ea8f02421b2b73e77e68753a2b4c37768e

diff --git a/groupmap.h b/groupmap.h
index d698495..bdcd61e 100644
--- a/groupmap.h
+++ b/groupmap.h
@@ -34,19 +34,22 @@ public:
 		for (int i = 0; i < namesOfGroups.size(); i++) { groupIndex[namesOfGroups[i]] = i; }
 		return namesOfGroups;
 	}
+    vector<string> getNamesSeqs();
 	void setNamesOfGroups(vector<string> sn) { namesOfGroups = sn; }
-	map<string, int> groupIndex;  //groupname, vectorIndex in namesOfGroups. - used by collectdisplays and libshuff commands.
 	int getNumSeqs()  {  return groupmap.size();  }
-	vector<string> getNamesSeqs();
 	vector<string> getNamesSeqs(vector<string>); //get names of seqs belonging to a group or set of groups
 	int getNumSeqs(string); //return the number of seqs in a given group
-			
+    int getCopy(GroupMap*);
+    
+    
+    map<string, int> groupIndex;  //groupname, vectorIndex in namesOfGroups. - used by collectdisplays and libshuff commands.
+    
 private:
 	vector<string> namesOfGroups;
 	MothurOut* m;
 	ifstream fileHandle;
 	string groupFileName;
-	int index;
+    int index;
 	map<string, string>::iterator it;
 	void setNamesOfGroups(string); 
 	map<string, string> groupmap; //sequence name and groupname