X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=getrabundcommand.h;h=fd7a6b07fecf135262e310598a3936221cb98826;hp=dcf8c686dbd2bf75847ef500bf7fea0fbd087cb5;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e

diff --git a/getrabundcommand.h b/getrabundcommand.h
index dcf8c68..fd7a6b0 100644
--- a/getrabundcommand.h
+++ b/getrabundcommand.h
@@ -38,17 +38,16 @@ public:
 	
 private:
 	
-	string filename, listfile, sabundfile, inputfile, format, outputDir;
+	string filename, listfile, sabundfile, inputfile, format, outputDir, countfile;
 	ofstream out;
-	InputData* input;
-	RAbundVector* rabund;
 	vector<string> outputNames;
 
 	bool abort, allLines, sorted;
 	set<string> labels; //holds labels to be used
 	string label;
 
-	
+	int processList(ofstream& out);
+    int createRabund(CountTable& ct, ListVector*& list, RAbundVector*& rabund);
 };
 
 #endif