X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=getgroupscommand.cpp;fp=getgroupscommand.cpp;h=15dcbba802d5e850fccbb7bb71b05dba6af38b74;hp=45e0a783e393ba828d8bd74c3884fa45779a92f2;hb=a935b75dd890da5ae7f09e5e6179f90ab2955348;hpb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d

diff --git a/getgroupscommand.cpp b/getgroupscommand.cpp
index 45e0a78..15dcbba 100644
--- a/getgroupscommand.cpp
+++ b/getgroupscommand.cpp
@@ -370,7 +370,7 @@ int GetGroupsCommand::execute(){
                 m->mothurOut("\n[NOTE]: The count file should contain only unique names, so mothur assumes your fasta, list and taxonomy files also contain only uniques.\n\n");
             }
             CountTable ct;
-            ct.readTable(countfile, true);
+            ct.readTable(countfile, true, false);
             if (!ct.hasGroupInfo()) { m->mothurOut("[ERROR]: your count file does not contain group info, aborting.\n"); return 0; }
                 
             vector<string> gNamesOfGroups = ct.getNamesOfGroups();