X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=getgroupcommand.h;h=fb438dfd91caf9a8213e780db8c7b626768873d3;hp=fb3e810666320ea2cd1c32d4b14b0c2cac08c995;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=8bc3e5b38c2317a1715f53be22fa96455868c281

diff --git a/getgroupcommand.h b/getgroupcommand.h
index fb3e810..fb438df 100644
--- a/getgroupcommand.h
+++ b/getgroupcommand.h
@@ -11,26 +11,30 @@
  */
 
 #include "command.hpp"
-#include "globaldata.hpp"
 
 class GetgroupCommand : public Command {
 public:
 	GetgroupCommand(string);
 	GetgroupCommand();
-	~GetgroupCommand();
-	vector<string> getRequiredParameters();
-	vector<string> getValidParameters();
-	vector<string> getRequiredFiles();
-	map<string, vector<string> > getOutputFiles() { return outputTypes; }
-	int execute();
-	void help();
+	~GetgroupCommand() {}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "get.group";				}
+	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	string getHelpString();	
+    string getOutputPattern(string)	{ return "";  }
+	string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
+	string getDescription()		{ return "outputs group names"; }
+
+	
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
+	
 	
 private:
-	GlobalData* globaldata;
-	GroupMap* groupMap;
-	string outputFile, sharedfile;
+	
+	string outputFile, sharedfile, outputDir;
 	vector<string> outputNames;
-	map<string, vector<string> > outputTypes;
 	ofstream out;
 	ifstream in;
 	bool abort;