X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=getgroupcommand.cpp;h=3fc67d11612bccfdced922b1a8276b90cfc5b023;hp=b4d2d74d0cc72d6c7f4db7acbd4202e3ea5b9972;hb=3117b1c3109121dff476997d3c5db5b47a77729b;hpb=a5a908953ab2ebb9386a895e5ddddf0135ad1f99

diff --git a/getgroupcommand.cpp b/getgroupcommand.cpp
index b4d2d74..3fc67d1 100644
--- a/getgroupcommand.cpp
+++ b/getgroupcommand.cpp
@@ -14,6 +14,8 @@ GetgroupCommand::GetgroupCommand(){
 	try {
 		globaldata = GlobalData::getInstance();
 		groupMap = globaldata->gGroupmap;
+		outputFile = globaldata->inputFileName + ".bootGroups";
+		openOutputFile(outputFile, out);
 	}
 	catch(exception& e) {
 		cout << "Standard Error: " << e.what() << " has occurred in the GetgroupCommand class Function GetgroupCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
@@ -36,8 +38,11 @@ GetgroupCommand::~GetgroupCommand(){
 int GetgroupCommand::execute(){
 	try {
 		vector<string> groupNames = groupMap->namesOfGroups;	
-		for(int i = 0; i < groupNames.size(); i++)
+		for(int i = 0; i < groupNames.size(); i++) {
 			cout << groupNames[i] << "\n";
+			out << groupNames[i] << "\t" << groupNames[i] << "\n";
+		}
+		out.close();
 		return 0;	
 	}