X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=getcoremicrobiomecommand.h;h=80def83dc27d947df1d5f13a16315a38f279b514;hp=c8aaab349efdf568b5a24556cf81280e178f3bc5;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=f816b683e586575bfe3479760a8afd5ab08e8573

diff --git a/getcoremicrobiomecommand.h b/getcoremicrobiomecommand.h
index c8aaab3..80def83 100644
--- a/getcoremicrobiomecommand.h
+++ b/getcoremicrobiomecommand.h
@@ -26,7 +26,9 @@ public:
     string getCommandName()			{ return "get.coremicrobiome";			}
     string getCommandCategory()		{ return "OTU-Based Approaches";		} 
     //commmand category choices: Sequence Processing, OTU-Based Approaches, Hypothesis Testing, Phylotype Analysis, General, Clustering and Hidden
-    string getHelpString();	
+    
+	string getHelpString();	
+    string getOutputPattern(string);	
     string getCitation() { return "http://www.mothur.org/wiki/Get.coremicrobiome"; }
     string getDescription()		{ return "determines the fraction of OTUs that are found in varying numbers of samples for different minimum relative abundances"; }