X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=formatmatrix.h;h=859b78ab2b72569344ccf7c9485de76333ca5ae3;hp=4ef36d95d6d8e11db5bf065a755fd0292e809c17;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=832d53a9dfac6b1795735eec643d8cf627b0d8e3

diff --git a/formatmatrix.h b/formatmatrix.h
index 4ef36d9..859b78a 100644
--- a/formatmatrix.h
+++ b/formatmatrix.h
@@ -13,6 +13,7 @@
 #include "mothur.h"
 #include "listvector.hpp"
 #include "nameassignment.hpp"
+#include "counttable.h"
 
 
 //**********************************************************************************************************************
@@ -57,10 +58,11 @@
 class FormatMatrix {
 
 public:
-	FormatMatrix(){	}
+	FormatMatrix(){	m = MothurOut::getInstance(); }
 	virtual ~FormatMatrix() {}
 	
-	virtual void read(NameAssignment*){};
+	virtual int read(NameAssignment*){ return 1; }
+    virtual int read(CountTable*){ return 1; }
 	
 	void setCutoff(float c)			{	cutoff = c;			}
 	ListVector* getListVector()		{	return list;		}
@@ -72,6 +74,7 @@ protected:
 	float cutoff;
 	string distFile;
 	vector<int> rowPos;
+	MothurOut* m;
 };
 
 //**********************************************************************************************************************