X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=flowdata.cpp;h=7d61f8c265e060f2dc0002c94f69edfd054f89ae;hp=b2e856c28e5c939a00102e19d34a97799c11ae08;hb=615301e57c25e241356a9c2380648d117709458d;hpb=7d9e2bc58855132983da7ac9342880bc95055f77

diff --git a/flowdata.cpp b/flowdata.cpp
index b2e856c..7d61f8c 100644
--- a/flowdata.cpp
+++ b/flowdata.cpp
@@ -68,9 +68,7 @@ string FlowData::getSequenceName(ifstream& flowFile) {
         flowFile >> name;
 		
 		if (name.length() != 0) { 
-            for (int i = 0; i < name.length(); i++) {
-                if (name[i] == ':') { name[i] = '_'; m->changedSeqNames = true; }
-            }
+            m->checkName(name);
         }else{ m->mothurOut("Error in reading your flowfile, at position " + toString(flowFile.tellg()) + ". Blank name."); m->mothurOutEndLine(); m->control_pressed = true;  }
         
 		return name;
@@ -192,6 +190,27 @@ void FlowData::capFlows(int mF){
 
 //**********************************************************************************************************************
 
+bool FlowData::hasGoodHomoP(){
+	
+	try{
+        
+        float maxIntensity = (float) maxHomoP + 0.49;
+
+        for(int i=0;i<endFlow;i++){
+            if(flowData[i] > maxIntensity){
+                return 0;
+            }
+        }
+		return 1;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "FlowData", "hasMinFlows");
+		exit(1);
+	}
+}
+
+//**********************************************************************************************************************
+
 bool FlowData::hasMinFlows(int minFlows){
 	
 	try{