X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=fastamap.cpp;h=ebfecedb860bafb6385ca2f75a3752702354498b;hp=a1beda31ac5ee82c532676163179197a004f91eb;hb=5b7ac70116137b52dd7884b76c5bca660a5fea38;hpb=a2edaadb975e5cb5d6cf68353bfe95f53235600d

diff --git a/fastamap.cpp b/fastamap.cpp
index a1beda3..ebfeced 100644
--- a/fastamap.cpp
+++ b/fastamap.cpp
@@ -19,7 +19,7 @@ void FastaMap::readFastaFile(ifstream& in) {
 		name = line.substr(1, line.length());  //rips off '>'
 	
 		//read through file
-		while (in.eof() != true) {
+		while (!in.eof()) {
 			in >> line;
 			if (line != "") {
 				if (isalnum(line.at(0))) {  //if it's a sequence line
@@ -41,19 +41,9 @@ void FastaMap::readFastaFile(ifstream& in) {
 					sequence = "";
 				}
 			}
+			gobble(in);
 		}
 	
-		//store last sequence and name info.
-		seqmap[name] = sequence;
-		it = data.find(sequence);
-		if (it == data.end()) { 	//it's unique.
-			data[sequence].groupname = name;  //group name will be the name of the first duplicate sequence found.
-			data[sequence].groupnumber = 1;
-			data[sequence].names = name;
-		}else { // its a duplicate.
-			data[sequence].names += "," + name;
-			data[sequence].groupnumber++;
-		}
 			
 	}
 	catch(exception& e) {