X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=errorchecking.h;h=ac09f6ed49bdb074bbe2c6acfd404fef77cc7116;hp=c6671677ff40b0b398cdd4361781c7b9ad0ec1a2;hb=cdcf99b7760701e6869ca8e4e6e91c8e8c4ae186;hpb=edec660ee2be477ac1539109d949a60cb7e16243 diff --git a/errorchecking.h b/errorchecking.h index c667167..ac09f6e 100644 --- a/errorchecking.h +++ b/errorchecking.h @@ -35,7 +35,7 @@ class ErrorCheck { void clear(); void refresh(); string phylipfile, columnfile, listfile, rabundfile, sabundfile, namefile, groupfile, orderfile, fastafile, nexusfile, clustalfile, treefile, sharedfile, cutoff, format; - string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, ends, processors, size; + string precision, method, fileroot, label, line, iters, jumble, freq, single, rarefaction, shared, summary, randomtree, abund, sorted, trump, soft, filter, scale, countends, processors, size; string candidatefile, search, ksize, align, match, mismatch, gapopen, gapextend; string commandName, optionText; bool errorFree;