X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=errorchecking.cpp;h=41c1db9e678c5890472d9259017a16f6d6b84dc3;hp=8a56c15c9d977de80c230922405c97589251324a;hb=fd282e6b4be2560f5b1bd154a9e8d24b798eefaf;hpb=67b6343929b6dbed97c4b26c3bb849725d573f6d

diff --git a/errorchecking.cpp b/errorchecking.cpp
index 8a56c15..41c1db9 100644
--- a/errorchecking.cpp
+++ b/errorchecking.cpp
@@ -210,10 +210,13 @@ bool ErrorCheck::checkInput(string input) {
 			validateReadFiles();
 			validateReadDist();
 		}else if (commandName == "read.otu") { 
-			validateReadFiles();
-			validateReadPhil();	
-		}else if (commandName == "read.list") { 
-			validateParseFiles(); //checks the listfile and groupfile parameters
+			//you want to do shared commands
+			if ((listfile != "") && (groupfile != ""))	{
+				validateParseFiles(); //checks the listfile and groupfile parameters
+			}else { //you want to do single commands
+				validateReadFiles();
+				validateReadPhil();
+			}
 		}else if (commandName == "deconvolute") {
 			validateReadFiles();
 		}