X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=distancecommand.h;h=2f53232b5943d835e8c27adf7374a5e3a8ce168f;hp=af55406b372dbf0f56a546be4de2bc87f5072614;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hpb=14cddf859d97118481161bf3e85a647976020758

diff --git a/distancecommand.h b/distancecommand.h
index af55406..2f53232 100644
--- a/distancecommand.h
+++ b/distancecommand.h
@@ -119,11 +119,10 @@ static DWORD WINAPI MyDistThreadFunction(LPVOID lpParam){
 				if (pDataArray->output == "lt") { outFile << endl; }
 				
 				if(i % 100 == 0){
-					pDataArray->m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
-				}
+					pDataArray->m->mothurOutJustToScreen(toString(i) + "\t" + toString(time(NULL) - startTime)+"\n"); 				}
 				pDataArray->count++;
 			}
-			pDataArray->m->mothurOut(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
+			pDataArray->m->mothurOutJustToScreen(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)+"\n");
 		}else{
 			if(pDataArray->startLine == 0){	outFile << pDataArray->alignDB.getNumSeqs() << endl;	}
 			
@@ -148,11 +147,11 @@ static DWORD WINAPI MyDistThreadFunction(LPVOID lpParam){
 				outFile << endl; 
 				
 				if(i % 100 == 0){
-					pDataArray->m->mothurOut(toString(i) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
+					pDataArray->m->mothurOutJustToScreen(toString(i) + "\t" + toString(time(NULL) - startTime)+"\n"); 
 				}
 				pDataArray->count++;
 			}
-			pDataArray->m->mothurOut(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)); pDataArray->m->mothurOutEndLine();
+			pDataArray->m->mothurOutJustToScreen(toString(pDataArray->count) + "\t" + toString(time(NULL) - startTime)+"\n"); 
 		}
 		
 		outFile.close();