X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=deuniqueseqscommand.h;h=042ff498fce19a60cd51d7b1393ec2cd4074123c;hp=96ed29bd6aaa0f5a717d5164aa7a5a3e538dbaaf;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6

diff --git a/deuniqueseqscommand.h b/deuniqueseqscommand.h
index 96ed29b..042ff49 100644
--- a/deuniqueseqscommand.h
+++ b/deuniqueseqscommand.h
@@ -23,7 +23,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "deunique.seqs";		}
 	string getCommandCategory()		{ return "Sequence Processing";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "http://www.mothur.org/wiki/Deunique.seqs"; }
+	string getDescription()		{ return "reverse of the unique.seqs command, and creates a fasta file from a fasta and name file"; }
+
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }	
@@ -31,13 +36,10 @@ public:
 	
 private:
 
-	string fastaFile, nameFile, outputDir;
+	string fastaFile, nameFile, outputDir, countfile;
 	vector<string> outputNames;
 	bool abort;
-	
-	map<string, string> nameMap;
-	
-	int readNamesFile();
+
 	
 };