X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=deuniqueseqscommand.cpp;fp=deuniqueseqscommand.cpp;h=2ccb4617ce0fa10c4229e14d617294081673771d;hp=a6c151c38318f4a98917e5b46f81f5b8cd7cfc27;hb=7a1e4b563011b1fe4d466d64915a3cb960747125;hpb=6ce64c0c32f0aa22eaf70953bd8264130e20e18f

diff --git a/deuniqueseqscommand.cpp b/deuniqueseqscommand.cpp
index a6c151c..2ccb461 100644
--- a/deuniqueseqscommand.cpp
+++ b/deuniqueseqscommand.cpp
@@ -190,11 +190,9 @@ int DeUniqueSeqsCommand::execute() {
 		ofstream out;
         string thisOutputDir = outputDir;
 		if (outputDir == "") {  thisOutputDir += m->hasPath(fastaFile);  }
-		string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile));
-		int pos = outFastaFile.find("unique");
-		if (pos != string::npos) { outFastaFile = outputDir + outFastaFile.substr(0, pos); }
-        else { outFastaFile = outputDir + outFastaFile; }
-        map<string, string> variables; 
+        string outFastaFile = thisOutputDir + m->getRootName(m->getSimpleName(fastaFile));
+       
+        map<string, string> variables;
         variables["[filename]"] = outFastaFile;
         outFastaFile = getOutputFileName("fasta", variables);
 		m->openOutputFile(outFastaFile, out);