X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=degapseqscommand.h;h=3b03c9b0ca1d8a61704dd3c13885d12d8204100a;hp=192d6eb7397e143e5ff91389ca37a5be98857a6e;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=4ee9d3c973fb056f3105c26306da3b5d7dfb8108

diff --git a/degapseqscommand.h b/degapseqscommand.h
index 192d6eb..3b03c9b 100644
--- a/degapseqscommand.h
+++ b/degapseqscommand.h
@@ -16,9 +16,20 @@
 class DegapSeqsCommand : public Command {
 public:
 	DegapSeqsCommand(string);
-	~DegapSeqsCommand();
-	int execute();
-	void help();
+	DegapSeqsCommand();
+	~DegapSeqsCommand(){}
+	
+	vector<string> setParameters();
+	string getCommandName()			{ return "degap.seqs";		}
+	string getCommandCategory()		{ return "Sequence Processing";		}
+	
+	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "http://www.mothur.org/wiki/Degap.seqs"; }
+	string getDescription()		{ return "removes gap characters from sequences"; }
+
+	int execute(); 
+	void help() { m->mothurOut(getHelpString()); }	
 	
 private: