X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=deconvolutecommand.cpp;h=98109ef33c488a071b04ad5ada84ffcab9d2e1f8;hp=51fa43b39f87f06a3054808acb4937e05ae2337f;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=d39c47623faf0dc1e271f3d50efa6b029b622b88

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 51fa43b..98109ef 100644
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -209,7 +209,7 @@ int DeconvoluteCommand::execute() {
         }
         CountTable ct;
         if (countfile != "")  {  
-            ct.readTable(countfile, true);
+            ct.readTable(countfile, true, false);
             if (countfile == outCountFile){
                 //prepare filenames and open files
                 map<string, string> mvariables;