X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=deconvolutecommand.cpp;h=98109ef33c488a071b04ad5ada84ffcab9d2e1f8;hp=09e077b57ca8800d3663f6dd5c3515102aaa1129;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=196c22d0f93ba48e8ec54ab76608b6e3ba5e68cc

diff --git a/deconvolutecommand.cpp b/deconvolutecommand.cpp
index 09e077b..98109ef 100644
--- a/deconvolutecommand.cpp
+++ b/deconvolutecommand.cpp
@@ -209,7 +209,7 @@ int DeconvoluteCommand::execute() {
         }
         CountTable ct;
         if (countfile != "")  {  
-            ct.readTable(countfile);
+            ct.readTable(countfile, true, false);
             if (countfile == outCountFile){
                 //prepare filenames and open files
                 map<string, string> mvariables;