X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=createdatabasecommand.h;h=79b5646b864ddf13f59f69c3adb205d5df74fc16;hp=741feba082958ae8e4f2ec73f7a188255208b069;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=f687723a8357916e86a05116978e6869b039ce36

diff --git a/createdatabasecommand.h b/createdatabasecommand.h
index 741feba..79b5646 100644
--- a/createdatabasecommand.h
+++ b/createdatabasecommand.h
@@ -22,8 +22,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "create.database";		}
 	string getCommandCategory()		{ return "OTU-Based Approaches"; }
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Create.database"; }
 	string getDescription()		{ return "creates database file that includes, abundances across groups, representative sequences, and taxonomy for each OTU"; }
     
@@ -34,7 +35,7 @@ public:
 private:
 	
 	bool abort;
-	string sharedfile, listfile, groupfile, repfastafile, repnamesfile, contaxonomyfile, label, outputDir;
+	string sharedfile, listfile, groupfile, repfastafile, repnamesfile, contaxonomyfile, label, outputDir, countfile;
 	
 	vector<string> outputNames;