X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=coverage.h;h=8d6fead9aa33a25cb0fa9b3e1a98a01c61b18722;hp=2f9fcfb335054b03ecdc2298d7877c66ead900b6;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=8770435f2eedcbf4e69daba716144e83da1dd939

diff --git a/coverage.h b/coverage.h
index 2f9fcfb..8d6fead 100644
--- a/coverage.h
+++ b/coverage.h
@@ -5,35 +5,28 @@
  *  coverage.h
  *  Mothur
  *
- *  Created by Sarah Westcott on 3/9/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *  Created by Pat Schloss on 4/22/09.
+ *  Copyright 2009 Patrick D. Schloss. All rights reserved.
  *
  */
 
-#include "mothur.h"
-#include "fullmatrix.h"
-#include "globaldata.hpp"
+#include "calculator.h"
 
-using namespace std;
+/* This class implements the coverage estimator on single group. 
+ It is a child of the calculator class. */
 
 /***********************************************************************/
 
-class Coverage  {
+class Coverage : public Calculator  {
 	
-	public: 
-		Coverage();
-		~Coverage(){};
-		void getValues(FullMatrix*, vector< vector< vector<float> > >&, vector<float>, string);	//matrix, container for results, vector of distances, mode
-		
-	private:
-		GlobalData* globaldata;
-		int numGroups, numUserGroups;
-
+public: 
+	Coverage() : Calculator("coverage", 1, false) {};
+	EstOutput getValues(SAbundVector*);	
+	EstOutput getValues(vector<SharedRAbundVector*>) {return data;};
+	string getCitation() { return "http://www.mothur.org/wiki/Coverage"; }
 };
 
 
 /***********************************************************************/
 
-
-
-#endif
\ No newline at end of file
+#endif