X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=counttable.h;h=51d0b4544bc73c7e832826bad702028f0143a549;hp=b66c4c6ef5e90007025935c4f0820cedb11c624d;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hpb=ea4f373c28543cd1002b0dd7dc6e55c526647d59

diff --git a/counttable.h b/counttable.h
index b66c4c6..51d0b45 100644
--- a/counttable.h
+++ b/counttable.h
@@ -47,9 +47,11 @@ class CountTable {
         CountTable() { m = MothurOut::getInstance(); hasGroups = false; total = 0; uniques = 0; }
         ~CountTable() {}
     
+        //reads and creates smart enough to eliminate groups with zero counts 
         int createTable(set<string>&, map<string, string>&, set<string>&); //seqNames, seqName->group, groupNames 
         int createTable(string, string, bool); //namefile, groupfile, createGroup
-        int readTable(string);    
+        int readTable(string, bool);
+    
         int printTable(string);
         int printHeaders(ofstream&);
         int printSeq(ofstream&, string);
@@ -60,6 +62,7 @@ class CountTable {
         int getNumGroups() { return groups.size(); }
         vector<string> getNamesOfGroups() {  return groups;   }  //returns group names, if no group info vector is blank.
         int addGroup(string);
+        int removeGroup(string);
         
         int renameSeq(string, string); //used to change name of sequence for use with trees
         int setAbund(string, string, int); //set abundance number of seqs for that group for that seq