X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=countseqscommand.h;h=b4170a8867897b96e13f7483f6053b960f7629b4;hp=555d6a74fa36fa034b6d0aafeb5f07bd0c4e7bbc;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=f687723a8357916e86a05116978e6869b039ce36 diff --git a/countseqscommand.h b/countseqscommand.h index 555d6a7..b4170a8 100644 --- a/countseqscommand.h +++ b/countseqscommand.h @@ -23,8 +23,9 @@ public: vector setParameters(); string getCommandName() { return "count.seqs"; } string getCommandCategory() { return "Sequence Processing"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Count.seqs"; } string getDescription() { return "counts the number of sequences represented by each unique sequence in a namesfile"; }