X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=countgroupscommand.h;h=cd226a3da2c02107f4512acc126b067d195dfb8c;hp=dd0e0a23eb3ccb9a5f4072aa9bb076228f2fb8b2;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/countgroupscommand.h b/countgroupscommand.h
index dd0e0a2..cd226a3 100644
--- a/countgroupscommand.h
+++ b/countgroupscommand.h
@@ -23,8 +23,8 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "count.groups";			}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string) { return ""; }
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Count.groups"; }
 	string getDescription()		{ return "counts the number of sequences in each group"; }
 	
@@ -33,9 +33,10 @@ public:
 	
 	
 private:
-	string sharedfile, groupfile, outputDir, groups, accnosfile;
+	string sharedfile, groupfile, countfile, outputDir, groups, accnosfile;
 	bool abort;
 	vector<string> Groups;
+    vector<string> outputNames;
 };
 
 #endif