X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=countgroupscommand.h;h=cd226a3da2c02107f4512acc126b067d195dfb8c;hp=d27a7f8f94ce1577421061e862696de4a4856a2a;hb=cf9987b67aa49777a4c91c2d21f96e58bf17aa82;hpb=035f86272c776e1cccaa47021e26782e49cd41e7

diff --git a/countgroupscommand.h b/countgroupscommand.h
index d27a7f8..cd226a3 100644
--- a/countgroupscommand.h
+++ b/countgroupscommand.h
@@ -23,8 +23,8 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "count.groups";			}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string) { return ""; }
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Count.groups"; }
 	string getDescription()		{ return "counts the number of sequences in each group"; }
 	
@@ -36,6 +36,7 @@ private:
 	string sharedfile, groupfile, countfile, outputDir, groups, accnosfile;
 	bool abort;
 	vector<string> Groups;
+    vector<string> outputNames;
 };
 
 #endif