X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=cooccurrencecommand.h;h=758a9fff0c155261c1efbe60e7a0992d9b215681;hp=530db9e2d27cad41cda6dc4f37ad07b01c570009;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/cooccurrencecommand.h b/cooccurrencecommand.h
index 530db9e..758a9ff 100644
--- a/cooccurrencecommand.h
+++ b/cooccurrencecommand.h
@@ -28,9 +28,10 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "Cooccurrence";			}
 	string getCommandCategory()		{ return "Hypothesis Testing";	}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Cooccurrence"; }
+    string getOutputPattern(string);	
+	string getCitation() { return "Ulrich W & Gotelli NJ (2010).  Null model analysis of species associations using abundance data.  Ecology  91:3384.\nhttp://www.mothur.org/wiki/Cooccurrence"; }
 	string getDescription()		{ return "calculates four metrics and tests their significance to assess whether presence-absence patterns are different than what one would expect by chance."; }
 	
 	int execute();