X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=cooccurrencecommand.h;h=758a9fff0c155261c1efbe60e7a0992d9b215681;hp=08209190f3f51b0e334706530afed253684eb75e;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=90708fe9701e3827e477c82fb3652539c3bf2a0d

diff --git a/cooccurrencecommand.h b/cooccurrencecommand.h
index 0820919..758a9ff 100644
--- a/cooccurrencecommand.h
+++ b/cooccurrencecommand.h
@@ -28,8 +28,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "Cooccurrence";			}
 	string getCommandCategory()		{ return "Hypothesis Testing";	}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Ulrich W & Gotelli NJ (2010).  Null model analysis of species associations using abundance data.  Ecology  91:3384.\nhttp://www.mothur.org/wiki/Cooccurrence"; }
 	string getDescription()		{ return "calculates four metrics and tests their significance to assess whether presence-absence patterns are different than what one would expect by chance."; }