X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=consensusseqscommand.cpp;h=223e5dbb86600907fafaafdf5af48ee665adfc5b;hp=4f8c53bc9b8cd70fab82a13cd8507a8e5719a07a;hb=16abd6271c455bd01b34ff89a2e3641bef0fa128;hpb=896a4f281982a3c2889f6ce6d73be997072aceae

diff --git a/consensusseqscommand.cpp b/consensusseqscommand.cpp
index 4f8c53b..223e5db 100644
--- a/consensusseqscommand.cpp
+++ b/consensusseqscommand.cpp
@@ -142,7 +142,7 @@ ConsensusSeqsCommand::ConsensusSeqsCommand(string option)  {
 			}else { m->setFastaFile(fastafile); }	
 			
 			namefile = validParameter.validFile(parameters, "name", true);
-			if (namefile == "not open") { abort = true; }
+			if (namefile == "not open") { namefile = ""; abort = true; }
 			else if (namefile == "not found") { namefile = ""; }
 			else { m->setNameFile(namefile); }
 			
@@ -163,7 +163,11 @@ ConsensusSeqsCommand::ConsensusSeqsCommand(string option)  {
 			
 			//if the user changes the output directory command factory will send this info to us in the output parameter 
 			outputDir = validParameter.validFile(parameters, "outputdir", false);		if (outputDir == "not found"){	outputDir = m->hasPath(fastafile);	}
-
+			
+			if (namefile == ""){
+				vector<string> files; files.push_back(fastafile); 
+				parser.getNameFile(files);
+			}
 		}
 	}
 	catch(exception& e) {