X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=commandoptionparser.hpp;h=0c3a6f378b02a1b86c5f4cad5a52302c239b7877;hp=6a616289e024cb0656e338e0a73f7aed31c98c1c;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=20a2d0350a737a434c89f303662d64a8eeea7b05

diff --git a/commandoptionparser.hpp b/commandoptionparser.hpp
index 6a61628..0c3a6f3 100644
--- a/commandoptionparser.hpp
+++ b/commandoptionparser.hpp
@@ -1,15 +1,20 @@
 #ifndef COMMANDOPTIONPARSER_HPP
 #define COMMANDOPTIONPARSER_HPP
 
+#include "mothur.h"
+#include "mothurout.h"
+
 //**********************************************************************************************************************
 
 class CommandOptionParser {
 public:
 	CommandOptionParser(string);
 	string getCommandString();
+	string getOptionString();
 	
 private:
-	string commandString;
+	string commandString, optionString;
+	MothurOut* m;
 };
 
 //**********************************************************************************************************************