X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=commandfactory.cpp;h=30b76f813f6710ff9c2cda0819305ca8837f7bf5;hp=32d42113d60a997b2404053bf0de39c68a28c71a;hb=dabb32850eae34e26b066a7da55716ad685786a3;hpb=13193e6688c91b6a25e39d357caa7f4b4bf5de5f

diff --git a/commandfactory.cpp b/commandfactory.cpp
index 32d4211..30b76f8 100644
--- a/commandfactory.cpp
+++ b/commandfactory.cpp
@@ -72,6 +72,7 @@
 #include "chimerapintailcommand.h"
 #include "chimerabellerophoncommand.h"
 #include "setlogfilecommand.h"
+#include "phylodiversitycommand.h"
 
 /*******************************************************/
 
@@ -151,6 +152,7 @@ CommandFactory::CommandFactory(){
 	commands["parse.list"]			= "parse.list";
 	commands["parse.sff"]			= "parse.sff";
 	commands["set.logfile"]			= "set.logfile";
+	commands["phylo.diversity"]		= "phylo.diversity";
 	commands["classify.seqs"]		= "MPIEnabled"; 
 	commands["dist.seqs"]			= "MPIEnabled";
 	commands["filter.seqs"]			= "MPIEnabled";
@@ -267,6 +269,7 @@ Command* CommandFactory::getCommand(string commandName, string optionString){
 		else if(commandName == "set.logfile")			{	command = new SetLogFileCommand(optionString);				}
 		else if(commandName == "parse.list")			{	command = new ParseListCommand(optionString);				}
 		else if(commandName == "parse.sff")				{	command = new ParseSFFCommand(optionString);				}
+		else if(commandName == "phylo.diversity")		{	command = new PhyloDiversityCommand(optionString);			}
 		else											{	command = new NoCommand(optionString);						}
 
 		return command;