X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=collectsharedcommand.h;h=868cd473b29cb97ba5ee38f847aab8343e06c3ac;hp=d7f2f8f3d946208cee976595bf6d8113811e7094;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6

diff --git a/collectsharedcommand.h b/collectsharedcommand.h
index d7f2f8f..868cd47 100644
--- a/collectsharedcommand.h
+++ b/collectsharedcommand.h
@@ -29,8 +29,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "collect.shared";			}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getHelpString();	
 	
+	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "Schloss PD, Handelsman J (2006). Introducing SONS, A tool that compares the membership of microbial communities. Appl Environ Microbiol 72: 6773-9. \nhttp://www.mothur.org/wiki/Collect.shared"; }
+	string getDescription()		{ return "generates collector's curves for calculators, which describe the similarity between communities or their shared richness"; }
+
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }