X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=clusterfragmentscommand.cpp;h=1b8cc71706710a3c80d53f6ff2fd877d07d98103;hp=ef199ccdf0a11efba99eaf0299ff50413b70b89f;hb=c48d91112209b841444923670dca5454da0e2a4d;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index ef199cc..1b8cc71 100644
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -262,10 +262,10 @@ int ClusterFragmentsCommand::execute(){
 				alignSeqs[i].active = 0;
 				
 			}//end if active i
-			if(i % 100 == 0)	{ m->mothurOut(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)); m->mothurOutEndLine();	}
+			if(i % 100 == 0)	{ m->mothurOutJustToScreen(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)+"\n"); 	}
 		}
 		
-		if(numSeqs % 100 != 0)	{ m->mothurOut(toString(numSeqs) + "\t" + toString(numSeqs - count) + "\t" + toString(count)); m->mothurOutEndLine();	}
+		if(numSeqs % 100 != 0)	{ m->mothurOutJustToScreen(toString(numSeqs) + "\t" + toString(numSeqs - count) + "\t" + toString(count)+"\n");	}
 	
 		
 		string fileroot = outputDir + m->getRootName(m->getSimpleName(fastafile));