X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=clusterdoturcommand.h;h=ccfe03bb74c42d43921f8a8224c210bc7a3a7ab0;hp=dd61a35bdcf3e45a72a590ec9b430584cc30376d;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=90708fe9701e3827e477c82fb3652539c3bf2a0d diff --git a/clusterdoturcommand.h b/clusterdoturcommand.h index dd61a35..ccfe03b 100644 --- a/clusterdoturcommand.h +++ b/clusterdoturcommand.h @@ -27,8 +27,9 @@ public: vector setParameters(); string getCommandName() { return "cluster.classic"; } string getCommandCategory() { return "Clustering"; } - string getOutputFileNameTag(string, string); - string getHelpString(); + + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 77:3219.\nSchloss PD, Handelsman J (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-6.\nhttp://www.mothur.org/wiki/Cluster.classic\n";} string getDescription() { return "cluster your sequences into OTUs using DOTUR’s method"; }