X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=clustercommand.h;h=cd9f47b07d9e8af9a6f04c014fabcfaf36a2818e;hp=96b7c08861f216862de0c1e600d07fed463eb56a;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7 diff --git a/clustercommand.h b/clustercommand.h index 96b7c08..cd9f47b 100644 --- a/clustercommand.h +++ b/clustercommand.h @@ -21,7 +21,7 @@ The cluster command outputs a .list , .rabund and .sabund files. The cluster command parameter options are method, cuttoff and precision. No parameters are required. The cluster command should be in the following format: cluster(method=yourMethod, cutoff=yourCutoff, precision=yourPrecision). - The acceptable methods are furthest, nearest and average. If you do not provide a method the default algorythm is furthest neighbor. + The acceptable methods are furthest, nearest and average. If you do not provide a method the default algorithm is furthest neighbor. The cluster() command outputs three files *.list, *.rabund, and *.sabund. */ @@ -56,6 +56,7 @@ private: string method, fileroot, tag, outputDir, phylipfile, columnfile, namefile, format, distfile, countfile; double cutoff; + float adjust; string showabund, timing; int precision, length; ofstream sabundFile, rabundFile, listFile;