X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=clearcutcommand.h;h=817c4a3290804405bd47582d9b3ec5349c182b43;hp=89fa1ab81b8c36f552439da56af1f3706bfe19db;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=82bf18e3ef0a52345519f91a682e64cc385b56bb

diff --git a/clearcutcommand.h b/clearcutcommand.h
index 89fa1ab..817c4a3 100644
--- a/clearcutcommand.h
+++ b/clearcutcommand.h
@@ -30,7 +30,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "clearcut";			}
 	string getCommandCategory()		{ return "Hypothesis Testing";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "Sheneman L, Evans J, Foster JA (2006). Clearcut: a fast implementation of relaxed neighbor joining. Bioinformatics 22: 2823-4. \nhttp://www.mothur.org/wiki/Clearcut"; }
+	string getDescription()		{ return "create a tree from a fasta or phylip file"; }
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }