X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=classifyseqscommand.h;h=59d9ee275800195255961639d77fb6c57d97f417;hp=a3328d8dcea09eebe63c641e04e1b816fc92fee1;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e

diff --git a/classifyseqscommand.h b/classifyseqscommand.h
index a3328d8..59d9ee2 100644
--- a/classifyseqscommand.h
+++ b/classifyseqscommand.h
@@ -163,8 +163,6 @@ static DWORD WINAPI MyClassThreadFunction(LPVOID lpParam){
 			inFASTA.seekg(pDataArray->start-1); pDataArray->m->gobble(inFASTA); 
 		}
 		
-		pDataArray->count = pDataArray->end;
-		
 		//make classify
 		Classify* myclassify;
         string outputMethodTag = pDataArray->method + ".";
@@ -183,7 +181,7 @@ static DWORD WINAPI MyClassThreadFunction(LPVOID lpParam){
 		
 		if (pDataArray->m->control_pressed) { delete myclassify; return 0; }
 		
-		int count = 0;
+		pDataArray->count = 0;
 		for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process
 			
 			if (pDataArray->m->control_pressed) { delete myclassify; return 0; }
@@ -209,15 +207,15 @@ static DWORD WINAPI MyClassThreadFunction(LPVOID lpParam){
 					
 				if (myclassify->getFlipped()) { outAcc << candidateSeq->getName() << endl; }
 				
-				count++;
+				pDataArray->count++;
 			}
 			delete candidateSeq;
 			//report progress
-			if((count) % 100 == 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(count)); pDataArray->m->mothurOutEndLine();		}
+			if((pDataArray->count) % 100 == 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n"); 	}
 			
 		}
 		//report progress
-		if((count) % 100 != 0){	pDataArray->m->mothurOut("Processing sequence: " + toString(count)); pDataArray->m->mothurOutEndLine();		}
+		if((pDataArray->count) % 100 != 0){	pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n"); 		}
 		
 		delete myclassify;
 		inFASTA.close();