X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=classifyseqscommand.cpp;h=b311821b3e8d293daac13107eb9e6771be360bf0;hp=edbd4c466bfa500bcaa72b1f8266f3dd40185ae9;hb=050a3ff02473a3d4c0980964e1a9ebe52e55d6b8;hpb=c48d91112209b841444923670dca5454da0e2a4d

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index edbd4c4..b311821 100644
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -812,7 +812,7 @@ int ClassifySeqsCommand::execute(){
                 PhyloSummary* taxaSum;
                 if (hasCount) { 
                     ct = new CountTable();
-                    ct->readTable(countfileNames[s]);
+                    ct->readTable(countfileNames[s], true);
                     taxaSum = new PhyloSummary(taxonomyFileName, ct);
                     taxaSum->summarize(tempTaxonomyFile);
                 }else {