X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=classifyotucommand.h;fp=classifyotucommand.h;h=45e377c3cbe1ac1ad735cd9c4f47d4c4c37c30a5;hp=b924775cf5b30436c1783714a758281cf072c32f;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hpb=f509429e06e545bde69c97cacc0eb436775bd329

diff --git a/classifyotucommand.h b/classifyotucommand.h
index b924775..45e377c 100644
--- a/classifyotucommand.h
+++ b/classifyotucommand.h
@@ -13,6 +13,7 @@
 #include "command.hpp"
 #include "listvector.hpp"
 #include "inputdata.h"
+#include "counttable.h"
 
 
 class ClassifyOtuCommand : public Command {
@@ -34,10 +35,11 @@ public:
 	void help() { m->mothurOut(getHelpString()); }	
 
 private:
-
+    GroupMap* groupMap;
+    CountTable* ct;
 	ListVector* list;
 	InputData* input;
-	string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis;
+	string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis, countfile;
 	bool abort, allLines, probs;
 	int cutoff;
 	set<string> labels; //holds labels to be used