X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=classifyotucommand.cpp;h=170c234ac245e6c32e3174ad80145fbcc359f2f2;hp=d0ddc691236e59cdd0fcb6a2578249375fd8ad0e;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=7aa301dfa67cfcb5b00c6b4e38a7ad56eb8337db

diff --git a/classifyotucommand.cpp b/classifyotucommand.cpp
index d0ddc69..170c234 100644
--- a/classifyotucommand.cpp
+++ b/classifyotucommand.cpp
@@ -293,7 +293,7 @@ int ClassifyOtuCommand::execute(){
 		if (namefile != "")     {	m->readNames(namefile, nameMap, true);	}
         if (groupfile != "")    {   groupMap = new GroupMap(groupfile);  groupMap->readMap();  groups = groupMap->getNamesOfGroups(); }
         else { groupMap = NULL;  }
-        if (countfile != "") {  ct = new CountTable(); ct->readTable(countfile);  if (ct->hasGroupInfo()) { groups = ct->getNamesOfGroups(); } }
+        if (countfile != "") {  ct = new CountTable(); ct->readTable(countfile, true);  if (ct->hasGroupInfo()) { groups = ct->getNamesOfGroups(); } }
         else {  ct = NULL;    }
         
 		//read taxonomy file and save in map for easy access in building bin trees