X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeraslayer.h;fp=chimeraslayer.h;h=ef7b3c3c4fb46efa313aa9b03b7fcbc84489c497;hp=8c3cbb22994cb4956f5752806a76bf5b9b1361df;hb=4e4d3cb3315fe25b40383c6f65cd6be23f58903d;hpb=8742edef7a51b82834289e570d336f5a81ba1f2b diff --git a/chimeraslayer.h b/chimeraslayer.h index 8c3cbb2..ef7b3c3 100644 --- a/chimeraslayer.h +++ b/chimeraslayer.h @@ -24,8 +24,8 @@ class ChimeraSlayer : public Chimera { public: - ChimeraSlayer(string, string, bool, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool); - ChimeraSlayer(string, string, bool, map&, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool); + ChimeraSlayer(string, string, bool, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool, string); + ChimeraSlayer(string, string, bool, map&, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool, string); ~ChimeraSlayer(); @@ -54,7 +54,7 @@ class ChimeraSlayer : public Chimera { vector chimeraResults; data_results printResults; - string chimeraFlags, searchMethod, fastafile; + string chimeraFlags, searchMethod, fastafile, blastlocation; bool realign, trimChimera; int window, numWanted, kmerSize, match, misMatch, minSim, minCov, minBS, minSNP, parents, iters, increment; float divR;