X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeraslayer.cpp;h=102db7478223d0027e676304288552a2148966fb;hp=9ceba52d4d8cc2ebf03e20da6d358ecca16ce7df;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc

diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index 9ceba52..102db74 100644
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -574,12 +574,13 @@ Sequence ChimeraSlayer::print(ostream& out, ostream& outAcc, data_results leftPi
 
 #ifdef USE_MPI
 //***************************************************************************************************************
-Sequence ChimeraSlayer::print(MPI_File& out, MPI_File& outAcc, data_results leftPiece, data_results rightPiece) {
+Sequence ChimeraSlayer::print(MPI_File& out, MPI_File& outAcc, data_results leftPiece, data_results rightPiece, bool& chimFlag) {
 	try {
 		MPI_Status status;
 		bool results = false;
 		string outAccString = "";
 		string outputString = "";
+        chimFlag = false;
 		
 		Sequence trim;
 		
@@ -628,6 +629,7 @@ Sequence ChimeraSlayer::print(MPI_File& out, MPI_File& outAcc, data_results left
 					memcpy(buf2, outAccString.c_str(), length);
 				
 					MPI_File_write_shared(outAcc, buf2, length, MPI_CHAR, &status);
+                    chimFlag = true;
 					delete buf2;
 					
 					if (trimChimera) {