X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimerapintailcommand.h;h=fa195e7253e870f2a38b8e72ca90a1a6875e4652;hp=1f30b7d32ef8e826fa0479ff10dcd529982c2b00;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/chimerapintailcommand.h b/chimerapintailcommand.h
index 1f30b7d..fa195e7 100644
--- a/chimerapintailcommand.h
+++ b/chimerapintailcommand.h
@@ -28,8 +28,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "chimera.pintail";		}
 	string getCommandCategory()		{ return "Sequence Processing"; }
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2005). At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71: 7724-36. \nAshelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2006). New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol 72: 5734-41. \nhttp://www.mothur.org/wiki/Chimera.pintail"; }
 	string getDescription()		{ return "detect chimeric sequences"; }