X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimerapintailcommand.cpp;h=9d492afe950713cefd4d1fad7fcd72a6da74640c;hp=d2b73998da9e0319880a8baf5948ed15a6132ae6;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=deba0af0ccdcb6005ed5b2b82649b137c63fbdf7

diff --git a/chimerapintailcommand.cpp b/chimerapintailcommand.cpp
index d2b7399..9d492af 100644
--- a/chimerapintailcommand.cpp
+++ b/chimerapintailcommand.cpp
@@ -636,10 +636,10 @@ int ChimeraPintailCommand::driver(linePair* filePos, string outputFName, string
 			#endif
 			
 			//report progress
-			if((count) % 100 == 0){	m->mothurOut("Processing sequence: " + toString(count)); m->mothurOutEndLine();		}
+			if((count) % 100 == 0){	m->mothurOutJustToScreen("Processing sequence: " + toString(count) + "\n"); 		}
 		}
 		//report progress
-		if((count) % 100 != 0){	m->mothurOut("Processing sequence: " + toString(count)); m->mothurOutEndLine();		}
+		if((count) % 100 != 0){	m->mothurOutJustToScreen("Processing sequence: " + toString(count) + "\n"); 		}
 		
 		out.close();
 		out2.close();
@@ -695,10 +695,10 @@ int ChimeraPintailCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_Fi
 			delete candidateSeq;
 			
 			//report progress
-			if((i+1) % 100 == 0){  cout << "Processing sequence: " << (i+1) << endl;	m->mothurOutJustToLog("Processing sequence: " + toString(i+1) + "\n");		}
+			if((i+1) % 100 == 0){  cout << "Processing sequence: " << (i+1) << endl;			}
 		}
 		//report progress
-		if(num % 100 != 0){		cout << "Processing sequence: " << num << endl;	m->mothurOutJustToLog("Processing sequence: " + toString(num) + "\n"); 	}
+		if(num % 100 != 0){		cout << "Processing sequence: " << num << endl;	 	}
 		
 				
 		return 0;