X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeracheckcommand.h;h=8981a14ff5e6e7813ab54123fe3fa1c8b68a0bc4;hp=61129cd618264c62322ccfe8a0a2107140170358;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96 diff --git a/chimeracheckcommand.h b/chimeracheckcommand.h index 61129cd..8981a14 100644 --- a/chimeracheckcommand.h +++ b/chimeracheckcommand.h @@ -27,8 +27,9 @@ public: vector setParameters(); string getCommandName() { return "chimera.check"; } string getCommandCategory() { return "Sequence Processing"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "CHIMERA_CHECK version 2.7 written by Niels Larsen (http://wdcm.nig.ac.jp/RDP/docs/chimera_doc.html) \nhttp://www.mothur.org/wiki/Chimera.check"; } string getDescription() { return "detect chimeric sequences"; }