X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeracheckcommand.cpp;h=4947dc97939b6b147718968bb70e544ca262cc00;hp=66cf12fb8768bcc9c4995256544761e2d8baf820;hb=cd985cf388dcc4c7de8251339206aec5f7e12f1e;hpb=54a6cb0ef32b761ebd7ae35f1e60947edf44d699

diff --git a/chimeracheckcommand.cpp b/chimeracheckcommand.cpp
index 66cf12f..4947dc9 100644
--- a/chimeracheckcommand.cpp
+++ b/chimeracheckcommand.cpp
@@ -245,7 +245,7 @@ int ChimeraCheckCommand::execute(){
 			if(processors == 1){
 				ifstream inFASTA;
 				openInputFile(fastafile, inFASTA);
-				numSeqs=count(istreambuf_iterator<char>(inFASTA),istreambuf_iterator<char>(), '>');
+				getNumSeqs(inFASTA, numSeqs);
 				inFASTA.close();
 				
 				lines.push_back(new linePair(0, numSeqs));
@@ -309,7 +309,7 @@ int ChimeraCheckCommand::execute(){
 		#else
 			ifstream inFASTA;
 			openInputFile(fastafile, inFASTA);
-			numSeqs=count(istreambuf_iterator<char>(inFASTA),istreambuf_iterator<char>(), '>');
+			getNumSeqs(inFASTA, numSeqs);
 			inFASTA.close();
 			lines.push_back(new linePair(0, numSeqs));