X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimeraccodecommand.h;h=52bf07d01f6a411b870e119f82ef97f7b6f45cbd;hp=408e2feb05f541cd46945c231df7b70f8dea276e;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96 diff --git a/chimeraccodecommand.h b/chimeraccodecommand.h index 408e2fe..52bf07d 100644 --- a/chimeraccodecommand.h +++ b/chimeraccodecommand.h @@ -26,8 +26,9 @@ public: vector setParameters(); string getCommandName() { return "chimera.ccode"; } string getCommandCategory() { return "Sequence Processing"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "Gonzalez JM, Zimmermann J, Saiz-Jimenez C (2005). Evaluating putative chimeric sequences from PCR-amplified products. Bioinformatics 21: 333-7. \nhttp://www.mothur.org/wiki/Chimera.ccode"; } string getDescription() { return "detect chimeric sequences"; }