X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimerabellerophoncommand.h;fp=chimerabellerophoncommand.h;h=23e555d6914482d9a2c819b079715d1a178d0f53;hp=015f2b78a6d412deda2dc639b4c7a2b3b055ec17;hb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e;hpb=79a7d3273749b08d4f9f8dfe350c964ff0c4351e diff --git a/chimerabellerophoncommand.h b/chimerabellerophoncommand.h index 015f2b7..23e555d 100644 --- a/chimerabellerophoncommand.h +++ b/chimerabellerophoncommand.h @@ -26,8 +26,9 @@ public: vector setParameters(); string getCommandName() { return "chimera.bellerophon"; } string getCommandCategory() { return "Sequence Processing"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "Huber T, Faulkner G, Hugenholtz P (2004). Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-9. \nhttp://www.mothur.org/wiki/Chimera.bellerophon"; } string getDescription() { return "detect chimeric sequences"; }