X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=chimera.cpp;h=54124872b7a5e87ce4aa545585fcb4b94c759044;hp=ae9ad9a46ef1ce5634c867219904857731bf3d6e;hb=0571957d68cbbc0e425af1db8e808f826010b9e2;hpb=77ac47e1ea0b5a0c6f55eb25e6bc7d7494ed3ad2

diff --git a/chimera.cpp b/chimera.cpp
index ae9ad9a..5412487 100644
--- a/chimera.cpp
+++ b/chimera.cpp
@@ -186,6 +186,8 @@ vector<Sequence*> Chimera::readSeqs(string file) {
 	
 		m->mothurOut("Done."); m->mothurOutEndLine();
 		
+		filterString = (string(container[0]->getAligned().length(), '1'));
+		
 		return container;
 	}
 	catch(exception& e) {