X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=ccode.cpp;h=00cd3f1948e009a86456e32bbcde2a40c6f889ac;hp=ee88ba1c84838b2b9d6e4edaef2899ca81d31dee;hb=b206f634aae1b4ce13978d203247fb64757d5482;hpb=2e28b53eb15d5dc11653247ee12aed2c7e5aac43

diff --git a/ccode.cpp b/ccode.cpp
index ee88ba1..00cd3f1 100644
--- a/ccode.cpp
+++ b/ccode.cpp
@@ -11,12 +11,13 @@
 #include "ignoregaps.h"
 #include "eachgapdist.h"
 
-
 //***************************************************************************************************************
 Ccode::Ccode(string filename, string temp, bool f, string mask, int win, int numW, string o) : Chimera() {  
+ try {	
+	
 	fastafile = filename;  
 	outputDir = o; 
-	templateFileName = temp;  templateSeqs = readSeqs(temp);
+	templateFileName = temp;  templateSeqs = readSeqs(temp); 
 	setMask(mask);
 	filter = f;
 	window = win;
@@ -63,6 +64,11 @@ Ccode::Ccode(string filename, string temp, bool f, string mask, int win, int num
 		out2 << "Place in masked, filtered and trimmed sequence\tPlace in original alignment" << endl;
 		out2.close();
 	#endif
+	}
+	catch(exception& e) {
+		m->errorOut(e, "Ccode", "Ccode");
+		exit(1);
+	}
 }
 //***************************************************************************************************************
 Ccode::~Ccode() {