X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=catchallcommand.h;h=32be8b63d2ce751391ae5ebbc6154be221b77c9d;hp=d1b8a2a8dfabf300d4d6cb7591e043e2ea48b113;hb=d1c97b8c04bb75faca1e76ffad60b37a4d789d3d;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96

diff --git a/catchallcommand.h b/catchallcommand.h
index d1b8a2a..32be8b6 100644
--- a/catchallcommand.h
+++ b/catchallcommand.h
@@ -31,9 +31,10 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "catchall";			}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
-	string getCitation() { return "Bunge, J. (2011). Estimating the number of species with CatchAll. Forthcoming in Proceedings of the Pacific Symposium on Biocomputing 2011.\nhttp://www.northeastern.edu/catchall/index.html http://www.mothur.org/wiki/Catchall"; }
+    string getOutputPattern(string);	
+	string getCitation() { return "Bunge J, Woodard L, Bohning D, Foster JA, Connolly S, Allen HK (2012). Estimating population diversity with CatchAll. Bioinformatics  28:1045.\nhttp://www.northeastern.edu/catchall/index.html\nhttp://www.mothur.org/wiki/Catchall"; }
 	string getDescription()		{ return "estimate number of species"; }
 	
 	int execute();